Seven years have passed after the battle of Teppelin... Humans have since reclaimed the surface of the earth and enjoy an unprecedented period of peace and prosperity. However, humanity's increasing population growth triggers the sudden emergence of an unknown, powerful enemy. The fearsome, manipulative power of the mysterious Anti-Spiral proves too overwhelming for humans to even fight back. When everyone becomes desperate and loses hope, Team Dai-Gurren members reunite to stand up once again!

Simon and Kamina live in an underground city monitored by the village chief. When Simon stumbles upon an artifact and beastmen invade from the surface, Simon and Kamina rebel against them.

Pandy and Retro awaken naked on Earth with no recollection of their past. They embark on a crime spree in search of food and clothing, but are captured by authorities and sent to the infamous lunar penitentiary named Dead Leaves.

阴云密布的本能町，在神秘恐怖的本能字学园，高高在上的学生会长鬼龙院皋月（柚木凉香 配音）只手遮天，她通过“极制服”统领校内的学生，极制服由所佩戴的星星数量分级，级别越高拥有的战斗力就越强。这一天，一个背着单片太刀剪的女孩出现在本能字学园门口。她叫缠流子（小清水亚美 配音 ），为了调查杀害父亲的真正凶手而来到这个凶险的所在。谁知她刚刚到来不久，便遭到蟇郡苛（稻田彻 配音）、猿投山渦（桧山修之 配音）等学生会四天王的阻击。
关键时刻，缠流子意外得到父亲制作的黑色神衣，由此战斗力大增。连番激烈的战斗在本能字学园展开……